Pipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.4.0
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Pipeline release! nf-core/mag v3.3.1 - mag 3.3.1 - [2025-03-13]!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.1
Pipeline release! nf-core/mag v3.3.0 - mag 3.3.0 - Red Reindeer!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.3.0
GitHubRelease mag 3.3.0 - Red Reindeer · nf-core/magAdded
#692 - Added Nanoq as optional longread filtering tool (added by @muabnezor)
#692 - Added chopper as optional longread filtering tool and/or phage lambda removal tool (added by @muabnezor)
#...
Pipeline release! nf-core/mag v3.2.1 - mag 3.2.1 [2024-10-30]!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.1
GitHubRelease mag 3.2.1 [2024-10-30] · nf-core/magFixed
#707 - Fix missing space resulting in malformed args for MEGAHIT (reported by @d4straub, fix by @jfy133)
Pipeline release! nf-core/mag v3.2.0 - mag 3.2.0 - Salmon Salmon!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.2.0
GitHubRelease mag 3.2.0 - Salmon Salmon · nf-core/magAdded
#674 - Added --longread_adaptertrimming_tool Where user can chose between porechop_abi (default) and porechop (added by @muabnezor)
Changed
#674 - Changed to porechop-abi as default adapte...
Pipeline release! nf-core/mag v3.1.0 - mag 3.1.0 - Pink Panda!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.1.0
#annotation #assembly #binning #long-read-sequencing #metagenomes #metagenomics #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
GitHubRelease mag 3.1.0 - Pink Panda · nf-core/magCautionThis release contains a potentially 'breaking change' for some users. The --gtdbtk_pplacer_scratch flag has been replaced with --gtdbtk_pplacer_useram. Check the parameter documentation for ...
Pipeline release! nf-core/mag v3.0.3 - 3.0.3 [2024-08-27]!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.0.3
#annotation #assembly #binning #long-read-sequencing #metagenomes #metagenomics #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
GitHubRelease 3.0.3 [2024-08-27] · nf-core/magFixed
#648 - Fix sample ID/assembly ID check failure when no IDs match (reported by @zackhenny, fix by @prototaxites)
#646 - GTDB-Tk directory input now creates a value channel so it runs for all ...
Pipeline release! nf-core/mag v3.0.2 - 3.0.2 [2024-07-04]!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.0.2
#annotation #assembly #binning #long-read-sequencing #metagenomes #metagenomics #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
GitHubRelease 3.0.2 [2024-07-04] · nf-core/magChanged
#633 - Changed BUSCO to use offline mode when the database is specified by the user (reported by @ChristophKnapp and many others, fix by @jfy133)
#632 - Use default NanoLyse log of just re...
Pipeline release! nf-core/mag v3.0.1 - mag 3.0.1!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.0.1
#annotation #assembly #binning #long-read-sequencing #metagenomes #metagenomics #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
GitHubRelease mag 3.0.1 · nf-core/magChanged
#625 - Updated link to geNomad database for downloading (reported by @amizeranschi, fix by @jfy133)
Fixed
#618 - Fix CENTRIFUGE mkfifo failures by using work directory /tmp (reported by ...
Pipeline release! nf-core/mag v3.0.0 - mag 3.0.0 - Magenta Magpie!
Please see the changelog: https://github.com/nf-core/mag/releases/tag/3.0.0
#annotation #assembly #binning #long-read-sequencing #metagenomes #metagenomics #nanopore #nanopore-sequencing #nfcore #openscience #nextflow #bioinformatics
GitHubRelease mag 3.0.0 - Magenta Magpie · nf-core/magCautionThis release contains a potentially 'breaking change' for some users. The pipeline no longer directly accepts FASTQ files via --input.
You must use a samplesheet and specify the FASTQs there...