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nf-corePipeline release! nf-core/mag v3.4.0 - mag 3.4.0 - Green Gecko!Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.4.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/mag/releases/tag/3.4.0</a><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#annotation</a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#assembly</a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#binning</a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#longreadsequencing</a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomes</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanoporesequencing</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

LeszekSuper cool paper (part of PhD thesis): I thought assembling the genome from raw signal isn't practical, but it seems not possible, but yielding results comparable/better to usual approaches: basecalling followed by de novo genome assembly! <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://genomic.social/tags/GenomeAssembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GenomeAssembly</a> <a href="https://arxiv.org/pdf/2410.17801" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://arxiv.org/pdf/2410.17801</a> <a href="https://arxiv.org/html/2503.02997v1#Ch7" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://arxiv.org/html/2503.02997v1#Ch7</a>

naturepokerLooking at a funny discrepancy between Dorado 0.8.3 methylation-SUP basecalled bam vs 0.9.1 methylation-SUP basecalled bam. They're the same raw files with same models, only Dorado version are different. Left, 0.8.3, right, 0.9.1That looks like one heck of a discrepancy for a few version numbers on basecalling software. <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a>

naturepokerWhat do <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#sequencing</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> folks think about this one? New preprint on hashing raw nanopore signals and using them directly for de-novo assembly. <a href="https://arxiv.org/abs/2503.02997v1" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://arxiv.org/abs/2503.02997v1</a>Hypothetical blow5-to-assembly pipe would be interesting, though figuring it out is way out of my depth.

Leszekshamelessly sharing our recent work: Rapid and accurate <a href="https://genomic.social/tags/demultiplexing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#demultiplexing</a> of direct <a href="https://genomic.social/tags/RNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RNA</a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> sequencing datasets with SeqTagger <a href="https://genomic.social/tags/paper" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#paper</a> <a href="https://genome.cshlp.org/content/early/2025/01/29/gr.279290.124.full.pdf" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://genome.cshlp.org/content/early/2025/01/29/gr.279290.124.full.pdf</a>

nf-corePipeline release! nf-core/taxprofiler v1.2.3 - v1.2.3 - Bouncy Basenji Patch!Please see the changelog: <a href="https://github.com/nf-core/taxprofiler/releases/tag/1.2.3" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/taxprofiler/releases/tag/1.2.3</a><a href="https://mstdn.science/tags/classification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#classification</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/longreads" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#longreads</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/pathogen" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pathogen</a> <a href="https://mstdn.science/tags/profiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#profiling</a> <a href="https://mstdn.science/tags/shotgun" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#shotgun</a> <a href="https://mstdn.science/tags/taxonomicclassification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicclassification</a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicprofiling</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

Una<a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/OxfordNanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#OxfordNanopore</a> <a href="https://mstdn.science/tags/NanoporeSequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#NanoporeSequencing</a> so just noticed that the 48 pack flowcells is no longer available from the Nanopore store. That is a big price hike for sequencing facilities who usually orders a big pack at a time. <a href="https://genomic.social/@nanopore" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@nanopore</a>

LeszekShamelessly sharing our latest publication: De novo basecalling of <a href="https://genomic.social/tags/RNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RNA</a> <a href="https://genomic.social/tags/modifications" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#modifications</a> at single molecule and nucleotide resolution <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://link.springer.com/epdf/10.1186/s13059-025-03498-6?sharing_token=IytKQ2p-kKbfSMJeCUsTt2_BpE1tBhCbnbw3BuzI2ROlz0B3e9LQUoHA9qh6NODgonYuX1G1GMfsxEe_sTuS_e_GRybSYX9mxrEoeASxC5RIlpmlV0mD6YesQ7BOjIbYdaxcUKYz3q8l2T2_bvSlO8Tykxj3ICWTyjPsKAmQ36s%3D" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://link.springer.com/epdf/10.1186/s13059-025-03498-6?sharing_token=IytKQ2p-kKbfSMJeCUsTt2_BpE1tBhCbnbw3BuzI2ROlz0B3e9LQUoHA9qh6NODgonYuX1G1GMfsxEe_sTuS_e_GRybSYX9mxrEoeASxC5RIlpmlV0mD6YesQ7BOjIbYdaxcUKYz3q8l2T2_bvSlO8Tykxj3ICWTyjPsKAmQ36s%3D</a>

nf-corePipeline release! nf-core/mag v3.3.1 - mag 3.3.1 - [2025-03-13]!Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.3.1" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/mag/releases/tag/3.3.1</a><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#annotation</a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#assembly</a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#binning</a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#longreadsequencing</a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomes</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanoporesequencing</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

nf-corePipeline release! nf-core/taxprofiler v1.2.2 - v1.2.2 - Bouncy Basenji Patch!Please see the changelog: <a href="https://github.com/nf-core/taxprofiler/releases/tag/1.2.2" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/taxprofiler/releases/tag/1.2.2</a><a href="https://mstdn.science/tags/classification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#classification</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/longreads" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#longreads</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/pathogen" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pathogen</a> <a href="https://mstdn.science/tags/profiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#profiling</a> <a href="https://mstdn.science/tags/shotgun" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#shotgun</a> <a href="https://mstdn.science/tags/taxonomicclassification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicclassification</a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicprofiling</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

nf-corePipeline release! nf-core/mag v3.3.0 - mag 3.3.0 - Red Reindeer!Please see the changelog: <a href="https://github.com/nf-core/mag/releases/tag/3.3.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/mag/releases/tag/3.3.0</a><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#annotation</a> <a href="https://mstdn.science/tags/assembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#assembly</a> <a href="https://mstdn.science/tags/binning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#binning</a> <a href="https://mstdn.science/tags/longreadsequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#longreadsequencing</a> <a href="https://mstdn.science/tags/metagenomes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomes</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/nanoporesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanoporesequencing</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

Christos Argyropoulos MD, PhDApparently, I am Mr. August for a patent of a protocol for <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> simultaneous sequencing of long and short RNAs <a href="https://www.biorxiv.org/content/10.1101/2022.12.16.520507v1.full" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2022.12.16.520507v1.full</a> <a href="https://mstdn.science/tags/UNM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#UNM</a>

Christos Argyropoulos MD PhDApparently, I am Mr. August for a patent of a protocol for <a href="https://mastodon.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> simultaneous sequencing of long and short RNAs <a href="https://www.biorxiv.org/content/10.1101/2022.12.16.520507v1.full" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2022.12.16.520507v1.full</a> <a href="https://mastodon.social/tags/UNM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#UNM</a>

Abish StephenToday was a special day. <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/LongReadSequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#LongReadSequencing</a>

naturepokerVery excited to dig into the paper - tool & methodology the authors developed could save lots of headaches for my current sequencing project. Can anyone reach the linked GitHub URL on the published article though? Entire NanoConsensus repo seems to 404 on my end. <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#sequencing</a> Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A- and P-sites | Nature Communications <a href="https://www.nature.com/articles/s41467-024-54368-x" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.nature.com/articles/s41467-024-54368-x</a>

nf-corePipeline release! nf-core/taxprofiler v1.2.1 - v1.2.1 - Bouncy Basenji Patch [2024-11-28]!Please see the changelog: <a href="https://github.com/nf-core/taxprofiler/releases/tag/1.2.1" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/taxprofiler/releases/tag/1.2.1</a><a href="https://mstdn.science/tags/classification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#classification</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/longreads" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#longreads</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/pathogen" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pathogen</a> <a href="https://mstdn.science/tags/profiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#profiling</a> <a href="https://mstdn.science/tags/shotgun" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#shotgun</a> <a href="https://mstdn.science/tags/taxonomicclassification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicclassification</a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicprofiling</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

naturepokerComparing what should be ONT r10 reads from two different third party sequencing providers.Quality differences between the two are VERY noticeable, despite both companies likely using similar methods to keep the prices down. I guess your choice of sequencing provider does matter! <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://genomic.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiology</a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#sequencing</a>

nf-corePipeline release! nf-core/detaxizer v1.1.0 - detaxizer 1.1.0 - Kombjuudr!Please see the changelog: <a href="https://github.com/nf-core/detaxizer/releases/tag/1.1.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/detaxizer/releases/tag/1.1.0</a><a href="https://mstdn.science/tags/deidentification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#deidentification</a> <a href="https://mstdn.science/tags/decontamination" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#decontamination</a> <a href="https://mstdn.science/tags/edna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#edna</a> <a href="https://mstdn.science/tags/fastq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#fastq</a> <a href="https://mstdn.science/tags/filter" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#filter</a> <a href="https://mstdn.science/tags/longreads" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#longreads</a> <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metabarcoding</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/shortreads" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#shortreads</a> <a href="https://mstdn.science/tags/shotgun" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#shotgun</a> <a href="https://mstdn.science/tags/taxonomicclassification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicclassification</a> <a href="https://mstdn.science/tags/taxonomicprofiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomicprofiling</a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

LeszekVERY excited to share SeqTagger with the world! <a href="https://github.com/novoalab/SeqTagger/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/novoalab/SeqTagger/</a>If you want to learn more about our super-fast and accurate <a href="https://genomic.social/tags/demultiplexing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#demultiplexing</a> tool for <a href="https://genomic.social/tags/direct" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#direct</a> <a href="https://genomic.social/tags/RNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RNA</a> <a href="https://genomic.social/tags/sequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#sequencing</a> (DRS), check out the thread below. <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://www.biorxiv.org/content/10.1101/2024.10.29.620808v1" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2024.10.29.620808v1</a>We started developing SeqTagger which follows a very straightforward logic: Let’s demultiplex by basecalling the <a href="https://genomic.social/tags/DNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DNA</a> <a href="https://genomic.social/tags/barcode" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#barcode</a> sequence (on an RNA pore) and aligning it to a set of reference barcode sequences.

Glyn Moody<a href="https://mastodon.social/tags/NHS" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#NHS</a> to launch 'real-time surveillance system' to prevent future pandemics - <a href="https://www.theregister.com/2024/11/08/nhs_realtime_surveillance_pandemic/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.theregister.com/2024/11/08/nhs_realtime_surveillance_pandemic/</a> "<a href="https://mastodon.social/tags/Nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Nanopore</a> <a href="https://mastodon.social/tags/DNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DNA</a> screening technology may identify novel pathogens, propose treatments in as little as six hours" could be good...

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