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nf-corePipeline release! nf-core/taxprofiler v1.2.0 - v1.2.0 - Bouncy Basenji [2024-10-03]!Please see the changelog: <a href="https://github.com/nf-core/taxprofiler/releases/tag/1.2.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/taxprofiler/releases/tag/1.2.0</a><a href="https://mstdn.science/tags/classification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#classification</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/long" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#long</a>-reads <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/pathogen" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pathogen</a> <a href="https://mstdn.science/tags/profiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#profiling</a> <a href="https://mstdn.science/tags/shotgun" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#shotgun</a> <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-classification <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-profiling <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

J of Systematics and EvolutionTo-do list: ✅Establish an NGS <a href="https://mstdn.science/tags/molecular" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#molecular</a> data set for <a href="https://mstdn.science/tags/Tetradium" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Tetradium</a> ✅Elucidate <a href="https://mstdn.science/tags/interspecific" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#interspecific</a> relationships via the <a href="https://mstdn.science/tags/hybrid" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#hybrid</a> capture method ✅Investigate the <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a> status of Euodia meliifolia var. celebica. <a href="https://doi.org/10.1111/jse.13127" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://doi.org/10.1111/jse.13127</a> @WileyEcolEvol <a href="https://mstdn.science/tags/evolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#evolution</a> <a href="https://mstdn.science/tags/ecology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ecology</a> <a href="https://mstdn.science/tags/phylogeny" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phylogeny</a> <a href="https://mstdn.science/tags/botany" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#botany</a>

nf-corePipeline release! nf-core/ampliseq v2.11.0 - Ampliseq Version 2.11.0!Please see the changelog: <a href="https://github.com/nf-core/ampliseq/releases/tag/2.11.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/ampliseq/releases/tag/2.11.0</a><a href="https://mstdn.science/tags/16s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#16s</a> <a href="https://mstdn.science/tags/18s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#18s</a> <a href="https://mstdn.science/tags/amplicon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#amplicon</a>-sequencing <a href="https://mstdn.science/tags/edna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#edna</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/iontorrent" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#iontorrent</a> <a href="https://mstdn.science/tags/its" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#its</a> <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metabarcoding</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pacbio</a> <a href="https://mstdn.science/tags/qiime2" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#qiime2</a> <a href="https://mstdn.science/tags/rrna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rrna</a> <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-classification <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-profiling <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

PLOS BiologyTetrapods are models for <a href="https://fediscience.org/tags/biodiversity" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#biodiversity</a> science. @mariormoura @walterjetz &co present <a href="https://fediscience.org/tags/TetrapodTraits" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#TetrapodTraits</a>, a database of 33,281 <a href="https://fediscience.org/tags/tetrapod" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#tetrapod</a> species, integrating <a href="https://fediscience.org/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>, spatial, <a href="https://fediscience.org/tags/phylogenetic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phylogenetic</a> & attribute data through <a href="https://fediscience.org/tags/phylogeny" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phylogeny</a>-based imputation <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PLOSBiology</a> <a href="https://plos.io/3WhkNm5" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://plos.io/3WhkNm5</a>

nf-corePipeline release! nf-core/ampliseq v2.10.0 - Ampliseq Version 2.10.0!Please see the changelog: <a href="https://github.com/nf-core/ampliseq/releases/tag/2.10.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/ampliseq/releases/tag/2.10.0</a><a href="https://mstdn.science/tags/16s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#16s</a> <a href="https://mstdn.science/tags/18s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#18s</a> <a href="https://mstdn.science/tags/amplicon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#amplicon</a>-sequencing <a href="https://mstdn.science/tags/edna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#edna</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/iontorrent" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#iontorrent</a> <a href="https://mstdn.science/tags/its" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#its</a> <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metabarcoding</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pacbio</a> <a href="https://mstdn.science/tags/qiime2" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#qiime2</a> <a href="https://mstdn.science/tags/rrna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rrna</a> <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-classification <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-profiling <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

nf-corePipeline release! nf-core/taxprofiler v1.1.8 - v1.1.8 - Augmented Akita Patch [2024-06-20]!Please see the changelog: <a href="https://github.com/nf-core/taxprofiler/releases/tag/1.1.8" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/taxprofiler/releases/tag/1.1.8</a><a href="https://mstdn.science/tags/classification" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#classification</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/long" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#long</a>-reads <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nanopore</a> <a href="https://mstdn.science/tags/pathogen" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pathogen</a> <a href="https://mstdn.science/tags/profiling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#profiling</a> <a href="https://mstdn.science/tags/shotgun" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#shotgun</a> <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-classification <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-profiling <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

J of Systematics and EvolutionXu et al. are redrawing the lines of the <a href="https://mstdn.science/tags/Asteraceae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Asteraceae</a> family tree with a new <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a> framework for the subtribe Crepidinae-created using <a href="https://mstdn.science/tags/nuclear" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nuclear</a> data with a <a href="https://mstdn.science/tags/phylogenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phylogenomics</a> approach. PLUS! Meet Qineryangia-a new monotypic <a href="https://mstdn.science/tags/genus" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#genus</a>. <a href="https://doi.org/10.1111/jse.13066" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://doi.org/10.1111/jse.13066</a> @WileyEcolEvol <a href="https://mstdn.science/tags/PlantSci" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PlantSci</a> <a href="https://mstdn.science/tags/botany" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#botany</a> <a href="https://mstdn.science/tags/evolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#evolution</a>

nf-corePipeline release! nf-core/ampliseq v2.9.0 - Ampliseq Version 2.9.0!Please see the changelog: <a href="https://github.com/nf-core/ampliseq/releases/tag/2.9.0" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/nf-core/ampliseq/releases/tag/2.9.0</a><a href="https://mstdn.science/tags/16s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#16s</a> <a href="https://mstdn.science/tags/18s" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#18s</a> <a href="https://mstdn.science/tags/amplicon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#amplicon</a>-sequencing <a href="https://mstdn.science/tags/edna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#edna</a> <a href="https://mstdn.science/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#illumina</a> <a href="https://mstdn.science/tags/iontorrent" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#iontorrent</a> <a href="https://mstdn.science/tags/its" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#its</a> <a href="https://mstdn.science/tags/metabarcoding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metabarcoding</a> <a href="https://mstdn.science/tags/metagenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#metagenomics</a> <a href="https://mstdn.science/tags/microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiome</a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#pacbio</a> <a href="https://mstdn.science/tags/qiime2" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#qiime2</a> <a href="https://mstdn.science/tags/rrna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rrna</a> <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-classification <a href="https://mstdn.science/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a>-profiling <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nfcore</a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#openscience</a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

Donald HobernAn updated checklist of geometrid <a href="https://scicomm.xyz/tags/moths" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#moths</a> (~14% of all moths) was published last year as the Online <a href="https://scicomm.xyz/tags/Taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Taxonomic</a> Facility of <a href="https://scicomm.xyz/tags/Geometridae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Geometridae</a> <a href="https://geometroidea.smns-bw.org/introduction" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://geometroidea.smns-bw.org/introduction</a>The data are now also in <a href="https://scicomm.xyz/tags/ChecklistBank" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ChecklistBank</a> and will replace the current outdated <a href="https://scicomm.xyz/tags/LepIndex" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#LepIndex</a> list in <a href="https://scicomm.xyz/tags/CatalogueOfLife" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CatalogueOfLife</a>, <a href="https://ecoevo.social/@gbif" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@gbif</a>, etc.I've also edited <a href="https://scicomm.xyz/tags/Notodontidae" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Notodontidae</a> in the <a href="https://fosstodon.org/@TaxonWorks" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@TaxonWorks</a> Global Lepidoptera Index dataset at least to match Schintlmeister's 2013 catalogue (now handling later works):<a href="https://www.checklistbank.org/dataset/55434/about" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.checklistbank.org/dataset/55434/about</a><a href="https://scicomm.xyz/tags/Lepidoptera" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Lepidoptera</a> <a href="https://scicomm.xyz/tags/entomology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#entomology</a>

Teresita Porter 🙋🏻‍♀️And yes, I'm including one of my own because I'm proud of it, LOL.All boreal forest successional stages needed to maintain the full suite of soil biodiversity, community composition, and function following wildfire<a href="https://www.nature.com/articles/s41598-023-30732-7" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.nature.com/articles/s41598-023-30732-7</a><a href="https://ecoevo.social/tags/BorealForest" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BorealForest</a> <a href="https://ecoevo.social/tags/soil" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#soil</a> <a href="https://ecoevo.social/tags/succession" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#succession</a> <a href="https://ecoevo.social/tags/taxonomic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#taxonomic</a> <a href="https://ecoevo.social/tags/functional" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#functional</a> <a href="https://ecoevo.social/tags/bacteria" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bacteria</a> <a href="https://ecoevo.social/tags/fungi" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#fungi</a> <a href="https://ecoevo.social/tags/arthropods" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#arthropods</a> <a href="https://ecoevo.social/tags/CommunityAssembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CommunityAssembly</a> <a href="https://ecoevo.social/tags/wildfire" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#wildfire</a>

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